J3_8K2A_015
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAAUUUAACACCCAU*AUUAAG*CAACACCCACUACCUAAAAAAUCCCAAACAUAUAACU
- Length
- 59 nucleotides
- Bulged bases
- 8K2A|1|L1|A|484, 8K2A|1|L1|U|488, 8K2A|1|L1|U|489, 8K2A|1|L1|C|548, 8K2A|1|L1|C|549, 8K2A|1|L1|C|554, 8K2A|1|L1|C|555, 8K2A|1|L1|U|563, 8K2A|1|L1|C|564, 8K2A|1|L1|A|571, 8K2A|1|L1|U|572, 8K2A|1|L1|A|573, 8K2A|1|L1|U|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2A|1|L1|A|483
8K2A|1|L1|A|484
8K2A|1|L1|A|485
8K2A|1|L1|A|486
8K2A|1|L1|U|487
8K2A|1|L1|U|488
8K2A|1|L1|U|489
8K2A|1|L1|A|490
8K2A|1|L1|A|491
8K2A|1|L1|C|492
8K2A|1|L1|A|493
8K2A|1|L1|C|494
8K2A|1|L1|C|495
8K2A|1|L1|C|496
8K2A|1|L1|A|497
8K2A|1|L1|U|498
*
8K2A|1|L1|A|522
8K2A|1|L1|U|523
8K2A|1|L1|U|524
8K2A|1|L1|A|525
8K2A|1|L1|A|526
8K2A|1|L1|G|527
*
8K2A|1|L1|C|542
8K2A|1|L1|A|543
8K2A|1|L1|A|544
8K2A|1|L1|C|545
8K2A|1|L1|A|546
8K2A|1|L1|C|547
8K2A|1|L1|C|548
8K2A|1|L1|C|549
8K2A|1|L1|A|550
8K2A|1|L1|C|551
8K2A|1|L1|U|552
8K2A|1|L1|A|553
8K2A|1|L1|C|554
8K2A|1|L1|C|555
8K2A|1|L1|U|556
8K2A|1|L1|A|557
8K2A|1|L1|A|558
8K2A|1|L1|A|559
8K2A|1|L1|A|560
8K2A|1|L1|A|561
8K2A|1|L1|A|562
8K2A|1|L1|U|563
8K2A|1|L1|C|564
8K2A|1|L1|C|565
8K2A|1|L1|C|566
8K2A|1|L1|A|567
8K2A|1|L1|A|568
8K2A|1|L1|A|569
8K2A|1|L1|C|570
8K2A|1|L1|A|571
8K2A|1|L1|U|572
8K2A|1|L1|A|573
8K2A|1|L1|U|574
8K2A|1|L1|A|575
8K2A|1|L1|A|576
8K2A|1|L1|C|577
8K2A|1|L1|U|578
Current chains
- Chain L1
- 16S rRNA
Nearby chains
- Chain L3
- Large ribosomal subunit protein mL53
- Chain L4
- Large ribosomal subunit protein mL54
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LJ
- Large ribosomal subunit protein uL10m
- Chain LK
- Large ribosomal subunit protein uL11m
- Chain LM
- Large ribosomal subunit protein uL13m
- Chain LP
- Large ribosomal subunit protein uL16m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Lj
- Large ribosomal subunit protein bL36m
- Chain Lz
- 39S ribosomal protein L52, mitochondrial
- Chain SR
- Large ribosomal subunit protein mL66
Coloring options: