J3_8K2C_020
3D structure
- PDB id
- 8K2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2C_020 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3648
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8K2C|1|S2|U|1340
8K2C|1|S2|C|1341
8K2C|1|S2|U|1342
8K2C|1|S2|U|1343
8K2C|1|S2|A|1344
8K2C|1|S2|G|1345
*
8K2C|1|S2|C|1384
8K2C|1|S2|G|1385
8K2C|1|S2|A|1386
8K2C|1|S2|G|1387
8K2C|1|S2|A|1388
8K2C|1|S2|C|1389
*
8K2C|1|S2|G|1481
8K2C|1|S2|C|1482
8K2C|1|S2|A|1483
8K2C|1|S2|A|1484
8K2C|1|S2|U|1485
8K2C|1|S2|A|1486
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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