J3_8K2C_023

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8K2C|1|L5|A|218, 8K2C|1|L5|G|219, 8K2C|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|C|196
8K2C|1|L5|A|197
8K2C|1|L5|A|198
8K2C|1|L5|G|199
*
8K2C|1|L5|C|215
8K2C|1|L5|C|216
8K2C|1|L5|C|217
8K2C|1|L5|A|218
8K2C|1|L5|G|219
8K2C|1|L5|C|220
8K2C|1|L5|C|221
8K2C|1|L5|C|222
8K2C|1|L5|G|223
8K2C|1|L5|U|224
8K2C|1|L5|G|225
8K2C|1|L5|G|226
8K2C|1|L5|A|227
8K2C|1|L5|C|228
*
8K2C|1|L5|G|240
8K2C|1|L5|G|241
8K2C|1|L5|U|242
8K2C|1|L5|A|243
8K2C|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26