J3_8K2C_028

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8K2C|1|L5|G|959, 8K2C|1|L5|G|965, 8K2C|1|L5|C|967, 8K2C|1|L5|C|968, 8K2C|1|L5|C|969, 8K2C|1|L5|U|971, 8K2C|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|C|712
8K2C|1|L5|C|713
*
8K2C|1|L5|G|955
8K2C|1|L5|A|956
8K2C|1|L5|G|957
8K2C|1|L5|G|958
8K2C|1|L5|G|959
8K2C|1|L5|A|960
8K2C|1|L5|G|961
8K2C|1|L5|C|962
8K2C|1|L5|G|963
8K2C|1|L5|A|964
8K2C|1|L5|G|965
8K2C|1|L5|A|966
8K2C|1|L5|C|967
8K2C|1|L5|C|968
8K2C|1|L5|C|969
8K2C|1|L5|G|970
8K2C|1|L5|U|971
8K2C|1|L5|C|972
8K2C|1|L5|G|973
8K2C|1|L5|C|974
8K2C|1|L5|C|975
8K2C|1|L5|G|976
*
8K2C|1|L5|C|1278
8K2C|1|L5|A|1279
8K2C|1|L5|C|1280
8K2C|1|L5|G|1281
8K2C|1|L5|G|1282
8K2C|1|L5|G|1283
8K2C|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32