J3_8K2C_030
3D structure
- PDB id
- 8K2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGC*GAGCCC*GGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 8K2C|1|L5|G|2096, 8K2C|1|L5|U|2097, 8K2C|1|L5|C|2255, 8K2C|1|L5|C|2266, 8K2C|1|L5|U|2267, 8K2C|1|L5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2C|1|L5|C|2087
8K2C|1|L5|A|2088
8K2C|1|L5|G|2089
8K2C|1|L5|U|2090
8K2C|1|L5|C|2091
8K2C|1|L5|G|2092
8K2C|1|L5|A|2093
8K2C|1|L5|G|2094
8K2C|1|L5|A|2095
8K2C|1|L5|G|2096
8K2C|1|L5|U|2097
8K2C|1|L5|G|2098
8K2C|1|L5|G|2099
8K2C|1|L5|A|2100
8K2C|1|L5|C|2101
8K2C|1|L5|G|2102
8K2C|1|L5|G|2103
8K2C|1|L5|G|2104
8K2C|1|L5|A|2105
8K2C|1|L5|G|2106
8K2C|1|L5|C|2107
8K2C|1|L5|G|2108
8K2C|1|L5|G|2109
8K2C|1|L5|C|2110
*
8K2C|1|L5|G|2252
8K2C|1|L5|A|2253
8K2C|1|L5|G|2254
8K2C|1|L5|C|2255
8K2C|1|L5|C|2256
8K2C|1|L5|C|2257
*
8K2C|1|L5|G|2261
8K2C|1|L5|G|2262
8K2C|1|L5|A|2263
8K2C|1|L5|C|2264
8K2C|1|L5|G|2265
8K2C|1|L5|C|2266
8K2C|1|L5|U|2267
8K2C|1|L5|A|2268
8K2C|1|L5|C|2269
8K2C|1|L5|G|2270
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- 60S ribosomal protein L29
- Chain Lr
- 60S ribosomal protein L28
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