J3_8K2C_035

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

8K2C|1|L5|G|4115, 8K2C|1|L5|C|4116, 8K2C|1|L5|U|4117, 8K2C|1|L5|U|4118, 8K2C|1|L5|C|4119, 8K2C|1|L5|U|4120, 8K2C|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|G|4091
8K2C|1|L5|G|4092
8K2C|1|L5|G|4093
8K2C|1|L5|G|4094
8K2C|1|L5|G|4095
8K2C|1|L5|C|4096
8K2C|1|L5|G|4097
*
8K2C|1|L5|C|4112
8K2C|1|L5|U|4113
8K2C|1|L5|C|4114
8K2C|1|L5|G|4115
8K2C|1|L5|C|4116
8K2C|1|L5|U|4117
8K2C|1|L5|U|4118
8K2C|1|L5|C|4119
8K2C|1|L5|U|4120
8K2C|1|L5|G|4121
8K2C|1|L5|G|4122
8K2C|1|L5|C|4123
8K2C|1|L5|G|4124
8K2C|1|L5|C|4125
8K2C|1|L5|C|4126
8K2C|1|L5|A|4127
8K2C|1|L5|A|4128
8K2C|1|L5|G|4129
*
8K2C|1|L5|C|4155
8K2C|1|L5|G|4156
8K2C|1|L5|A|4157
8K2C|1|L5|C|4158

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

SERPINE1 mRNA-binding protein 1

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a