J3_8K3O_003

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

ACGGGG*CUGGUA*UGGAU

Length

17 nucleotides

Bulged bases

8K3O|1|A|G|1504, 8K3O|1|A|G|1529

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K3O|1|A|A|923
8K3O|1|A|C|924
8K3O|1|A|G|925
8K3O|1|A|G|926
8K3O|1|A|G|927
8K3O|1|A|G|928
*
8K3O|1|A|C|1389
8K3O|1|A|U|1390
8K3O|1|A|G|1504
8K3O|1|A|G|1505
8K3O|1|A|U|1506
8K3O|1|A|A|1507
*
8K3O|1|A|U|1528
8K3O|1|A|G|1529
8K3O|1|A|G|1530
8K3O|1|A|A|1531
8K3O|1|A|U|1532

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain K

30S ribosomal protein S11

Chain X

30S ribosomal protein S21