J3_8K4E_003

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUGGA*UAC*GGAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K4E|1|A|G|941
8K4E|1|A|G|942
8K4E|1|A|U|943
8K4E|1|A|G|944
8K4E|1|A|G|945
8K4E|1|A|A|946
*
8K4E|1|A|U|1235
8K4E|1|A|A|1236
8K4E|1|A|C|1237
*
8K4E|1|A|G|1337
8K4E|1|A|G|1338
8K4E|1|A|A|1339
8K4E|1|A|A|1340
8K4E|1|A|U|1341
8K4E|1|A|C|1342

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9