J3_8K4E_005

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K4E_005 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.2674

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8K4E|1|A|C|990
8K4E|1|A|U|991
8K4E|1|A|U|992
8K4E|1|A|G|993
*
8K4E|1|A|C|1045
8K4E|1|A|A|1046
8K4E|1|A|G|1047
*
8K4E|1|A|C|1210
8K4E|1|A|U|1211
8K4E|1|A|U|1212
8K4E|1|A|A|1213
8K4E|1|A|C|1214
8K4E|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14