J3_8K82_008
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8K82|1|C1|G|2549, 8K82|1|C1|U|2550, 8K82|1|C1|U|2551, 8K82|1|C1|A|2554, 8K82|1|C1|U|2558, 8K82|1|C1|U|2559, 8K82|1|C1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_008 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1573
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8K82|1|C1|A|2529
8K82|1|C1|G|2530
8K82|1|C1|C|2531
8K82|1|C1|U|2532
*
8K82|1|C1|A|2547
8K82|1|C1|C|2548
8K82|1|C1|G|2549
8K82|1|C1|U|2550
8K82|1|C1|U|2551
8K82|1|C1|C|2552
8K82|1|C1|U|2553
8K82|1|C1|A|2554
8K82|1|C1|G|2555
8K82|1|C1|C|2556
8K82|1|C1|A|2557
8K82|1|C1|U|2558
8K82|1|C1|U|2559
8K82|1|C1|C|2560
8K82|1|C1|A|2561
8K82|1|C1|A|2562
8K82|1|C1|G|2563
*
8K82|1|C1|U|2578
8K82|1|C1|G|2579
8K82|1|C1|A|2580
8K82|1|C1|U|2581
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LX
- Large ribosomal subunit protein uL23
- Chain LZ
- Large ribosomal subunit protein eL27A
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lp
- Large ribosomal subunit protein eL43A
Coloring options: