J3_8K82_022
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 8K82|1|C1|U|117, 8K82|1|C1|G|120, 8K82|1|C1|A|121, 8K82|1|C1|U|147, 8K82|1|C1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C1|C|113
8K82|1|C1|A|114
8K82|1|C1|A|115
8K82|1|C1|A|116
8K82|1|C1|U|117
8K82|1|C1|U|118
8K82|1|C1|U|119
8K82|1|C1|G|120
8K82|1|C1|A|121
8K82|1|C1|A|122
8K82|1|C1|A|123
8K82|1|C1|U|124
*
8K82|1|C1|A|144
8K82|1|C1|G|145
8K82|1|C1|U|146
8K82|1|C1|U|147
8K82|1|C1|G|148
8K82|1|C1|U|149
8K82|1|C1|A|150
8K82|1|C1|A|151
8K82|1|C1|U|152
8K82|1|C1|U|153
8K82|1|C1|U|154
8K82|1|C1|G|155
8K82|1|C1|G|156
8K82|1|C1|A|157
8K82|1|C1|G|158
*
8K82|1|C1|C|263
8K82|1|C1|G|264
8K82|1|C1|A|265
8K82|1|C1|A|266
8K82|1|C1|G|267
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Li
- Large ribosomal subunit protein eL36A
Coloring options: