J3_8K82_028

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

8K82|1|C1|A|1065, 8K82|1|C1|U|1094, 8K82|1|C1|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C1|U|986
8K82|1|C1|U|987
*
8K82|1|C1|A|1062
8K82|1|C1|G|1063
8K82|1|C1|A|1064
8K82|1|C1|A|1065
8K82|1|C1|G|1066
*
8K82|1|C1|C|1092
8K82|1|C1|A|1093
8K82|1|C1|U|1094
8K82|1|C1|U|1095
8K82|1|C1|U|1096
8K82|1|C1|G|1097
8K82|1|C1|A|1098

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30A

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29