J3_8K82_031
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 8K82|1|C1|C|1556, 8K82|1|C1|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C1|A|1537
8K82|1|C1|G|1538
8K82|1|C1|A|1539
8K82|1|C1|U|1540
8K82|1|C1|G|1541
8K82|1|C1|G|1542
*
8K82|1|C1|C|1551
8K82|1|C1|G|1552
8K82|1|C1|U|1553
8K82|1|C1|U|1554
8K82|1|C1|U|1555
8K82|1|C1|C|1556
8K82|1|C1|A|1557
8K82|1|C1|A|1558
8K82|1|C1|A|1559
8K82|1|C1|G|1560
*
8K82|1|C1|C|1579
8K82|1|C1|A|1580
8K82|1|C1|C|1581
8K82|1|C1|C|1582
8K82|1|C1|A|1583
8K82|1|C1|U|1584
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lj
- Large ribosomal subunit protein eL37A
Coloring options: