J3_8K82_038

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C2|A|213
8K82|1|C2|G|214
8K82|1|C2|A|215
8K82|1|C2|U|216
8K82|1|C2|A|217
8K82|1|C2|A|218
8K82|1|C2|A|219
8K82|1|C2|A|220
8K82|1|C2|A|221
8K82|1|C2|A|222
8K82|1|C2|U|223
8K82|1|C2|C|224
8K82|1|C2|A|225
8K82|1|C2|A|226
8K82|1|C2|U|227
8K82|1|C2|G|228
*
8K82|1|C2|C|237
8K82|1|C2|U|238
8K82|1|C2|C|239
8K82|1|C2|U|240
8K82|1|C2|U|241
8K82|1|C2|U|242
8K82|1|C2|G|243
*
8K82|1|C2|C|250
8K82|1|C2|A|251
8K82|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SL

Small ribosomal subunit protein uS17A