J3_8K82_040
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8K82|1|C2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K82_040 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1215
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8K82|1|C2|U|633
8K82|1|C2|G|634
8K82|1|C2|A|635
*
8K82|1|C2|U|861
8K82|1|C2|A|862
8K82|1|C2|A|863
8K82|1|C2|U|864
8K82|1|C2|A|865
8K82|1|C2|G|866
*
8K82|1|C2|C|962
8K82|1|C2|A|963
8K82|1|C2|U|964
8K82|1|C2|U|965
8K82|1|C2|A|966
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7-A
- Chain SL
- Small ribosomal subunit protein uS17A
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
- Chain SX
- 40S ribosomal protein S23-A
- Chain Sb
- 40S ribosomal protein S27-A
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