J3_8K82_045

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAC*GCUAAGG*CACC

Length

15 nucleotides

Bulged bases

8K82|1|C1|U|1258, 8K82|1|C1|A|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C1|G|1229
8K82|1|C1|G|1230
8K82|1|C1|A|1231
8K82|1|C1|C|1232
*
8K82|1|C1|G|1256
8K82|1|C1|C|1257
8K82|1|C1|U|1258
8K82|1|C1|A|1259
8K82|1|C1|A|1260
8K82|1|C1|G|1261
8K82|1|C1|G|1262
*
8K82|1|C1|C|1277
8K82|1|C1|A|1278
8K82|1|C1|C|1279
8K82|1|C1|C|1280

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LK

Large ribosomal subunit protein uL11A

Chain P0

Large ribosomal subunit protein uL10