J3_8OEQ_024

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA

Length

36 nucleotides

Bulged bases

8OEQ|1|1|A|3142, 8OEQ|1|1|G|3143, 8OEQ|1|1|A|3180, 8OEQ|1|1|G|3181, 8OEQ|1|1|G|3184, 8OEQ|1|1|A|3233, 8OEQ|1|1|A|3235, 8OEQ|1|1|C|3237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OEQ|1|1|U|3138
8OEQ|1|1|U|3139
8OEQ|1|1|U|3140
8OEQ|1|1|U|3141
8OEQ|1|1|A|3142
8OEQ|1|1|G|3143
8OEQ|1|1|A|3144
8OEQ|1|1|U|3145
8OEQ|1|1|G|3146
*
8OEQ|1|1|C|3177
8OEQ|1|1|A|3178
8OEQ|1|1|U|3179
8OEQ|1|1|A|3180
8OEQ|1|1|G|3181
8OEQ|1|1|C|3182
8OEQ|1|1|A|3183
8OEQ|1|1|G|3184
8OEQ|1|1|G|3185
*
8OEQ|1|1|C|3230
8OEQ|1|1|G|3231
8OEQ|1|1|G|3232
8OEQ|1|1|A|3233
8OEQ|1|1|U|3234
8OEQ|1|1|A|3235
8OEQ|1|1|G|3236
8OEQ|1|1|C|3237
8OEQ|1|1|A|3238
8OEQ|1|1|A|3239
8OEQ|1|1|U|3240
8OEQ|1|1|G|3241
8OEQ|1|1|U|3242
8OEQ|1|1|C|3243
8OEQ|1|1|A|3244
8OEQ|1|1|A|3245
8OEQ|1|1|C|3246
8OEQ|1|1|A|3247

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L33-A

Chain n

60S ribosomal protein L6

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13

Chain x

Ribosomal protein L22