J3_8OEQ_047
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUAAG*CGAU
- Length
- 24 nucleotides
- Bulged bases
- 8OEQ|1|AS|G|2527, 8OEQ|1|AS|U|2528, 8OEQ|1|AS|U|2529, 8OEQ|1|AS|A|2532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_047 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.0896
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|AS|A|2507
8OEQ|1|AS|G|2508
8OEQ|1|AS|C|2509
8OEQ|1|AS|U|2510
*
8OEQ|1|AS|A|2525
8OEQ|1|AS|C|2526
8OEQ|1|AS|G|2527
8OEQ|1|AS|U|2528
8OEQ|1|AS|U|2529
8OEQ|1|AS|C|2530
8OEQ|1|AS|U|2531
8OEQ|1|AS|A|2532
8OEQ|1|AS|G|2533
8OEQ|1|AS|C|2534
8OEQ|1|AS|A|2535
8OEQ|1|AS|U|2536
8OEQ|1|AS|U|2537
8OEQ|1|AS|A|2538
8OEQ|1|AS|A|2539
8OEQ|1|AS|G|2540
*
8OEQ|1|AS|C|2550
8OEQ|1|AS|G|2551
8OEQ|1|AS|A|2552
8OEQ|1|AS|U|2553
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain BC
- 60S ribosomal protein L8
- Chain BU
- 60S ribosomal protein L27
- Chain BX
- 60S ribosomal protein L30
- Chain CB
- 60S ribosomal protein L34-B
- Chain CK
- 60S ribosomal protein L43-A
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