J3_8OEQ_054
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8OEQ|1|AU|U|60, 8OEQ|1|AU|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_054 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0651
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8OEQ|1|AU|A|44
8OEQ|1|AU|C|45
*
8OEQ|1|AU|G|58
8OEQ|1|AU|A|59
8OEQ|1|AU|U|60
8OEQ|1|AU|A|61
8OEQ|1|AU|C|62
8OEQ|1|AU|G|63
8OEQ|1|AU|U|64
*
8OEQ|1|AU|A|96
8OEQ|1|AU|A|97
8OEQ|1|AU|U|98
8OEQ|1|AU|C|99
8OEQ|1|AU|U|100
Current chains
- Chain AU
- 5.8S ribosomal RNA
Nearby chains
- Chain BS
- 60S ribosomal protein L25
- Chain CC
- Ribosomal protein L29
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
Coloring options: