J3_8OEQ_075
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OEQ_075 not in the Motif Atlas
- Homologous match to J3_8C3A_035
- Geometric discrepancy: 0.0568
- The information below is about J3_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_00811.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|CM|A|745
8OEQ|1|CM|G|746
8OEQ|1|CM|A|747
8OEQ|1|CM|G|748
*
8OEQ|1|CM|C|758
8OEQ|1|CM|A|759
8OEQ|1|CM|G|760
*
8OEQ|1|CM|U|769
8OEQ|1|CM|C|770
8OEQ|1|CM|G|771
8OEQ|1|CM|A|772
8OEQ|1|CM|A|773
8OEQ|1|CM|U|774
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CR
- 40S ribosomal protein S4
- Chain CW
- Ribosomal protein S4
- Chain DL
- 40S ribosomal protein S24
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