J3_8OEQ_080

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

8OEQ|1|CM|G|1184, 8OEQ|1|CM|G|1186, 8OEQ|1|CM|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OEQ_080 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.0546

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8OEQ|1|CM|C|1165
8OEQ|1|CM|U|1166
8OEQ|1|CM|U|1167
8OEQ|1|CM|A|1168
8OEQ|1|CM|A|1169
8OEQ|1|CM|U|1170
8OEQ|1|CM|U|1171
8OEQ|1|CM|U|1172
*
8OEQ|1|CM|G|1183
8OEQ|1|CM|G|1184
8OEQ|1|CM|G|1185
8OEQ|1|CM|G|1186
8OEQ|1|CM|A|1187
8OEQ|1|CM|A|1188
8OEQ|1|CM|A|1189
8OEQ|1|CM|C|1190
8OEQ|1|CM|U|1191
8OEQ|1|CM|C|1192
8OEQ|1|CM|A|1193
8OEQ|1|CM|C|1194
*
8OEQ|1|CM|G|1440
8OEQ|1|CM|G|1441
8OEQ|1|CM|C|1442
8OEQ|1|CM|C|1443
8OEQ|1|CM|G|1444

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain DC

40S ribosomal protein S15

Chain DF

40S ribosomal protein S18-B

Chain DH

Ribosomal protein S10

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein