J3_8OH6_020
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUAAG*CGAU
- Length
- 24 nucleotides
- Bulged bases
- 8OH6|1|1|G|2527, 8OH6|1|1|U|2528, 8OH6|1|1|U|2529, 8OH6|1|1|C|2530, 8OH6|1|1|U|2531, 8OH6|1|1|A|2532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_020 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.0518
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OH6|1|1|A|2507
8OH6|1|1|G|2508
8OH6|1|1|C|2509
8OH6|1|1|U|2510
*
8OH6|1|1|A|2525
8OH6|1|1|C|2526
8OH6|1|1|G|2527
8OH6|1|1|U|2528
8OH6|1|1|U|2529
8OH6|1|1|C|2530
8OH6|1|1|U|2531
8OH6|1|1|A|2532
8OH6|1|1|G|2533
8OH6|1|1|C|2534
8OH6|1|1|A|2535
8OH6|1|1|U|2536
8OH6|1|1|U|2537
8OH6|1|1|A|2538
8OH6|1|1|A|2539
8OH6|1|1|G|2540
*
8OH6|1|1|C|2550
8OH6|1|1|G|2551
8OH6|1|1|A|2552
8OH6|1|1|U|2553
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AA
- 60S ribosomal protein L27
- Chain AD
- 60S ribosomal protein L30
- Chain AH
- 60S ribosomal protein L34-B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-B
- Chain p
- 60S ribosomal protein L8
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