J3_8OH6_024

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA

Length

36 nucleotides

Bulged bases

8OH6|1|1|A|3142, 8OH6|1|1|G|3143, 8OH6|1|1|A|3180, 8OH6|1|1|G|3181, 8OH6|1|1|C|3182, 8OH6|1|1|G|3184, 8OH6|1|1|A|3233, 8OH6|1|1|A|3235, 8OH6|1|1|C|3237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OH6|1|1|U|3138
8OH6|1|1|U|3139
8OH6|1|1|U|3140
8OH6|1|1|U|3141
8OH6|1|1|A|3142
8OH6|1|1|G|3143
8OH6|1|1|A|3144
8OH6|1|1|U|3145
8OH6|1|1|G|3146
*
8OH6|1|1|C|3177
8OH6|1|1|A|3178
8OH6|1|1|U|3179
8OH6|1|1|A|3180
8OH6|1|1|G|3181
8OH6|1|1|C|3182
8OH6|1|1|A|3183
8OH6|1|1|G|3184
8OH6|1|1|G|3185
*
8OH6|1|1|C|3230
8OH6|1|1|G|3231
8OH6|1|1|G|3232
8OH6|1|1|A|3233
8OH6|1|1|U|3234
8OH6|1|1|A|3235
8OH6|1|1|G|3236
8OH6|1|1|C|3237
8OH6|1|1|A|3238
8OH6|1|1|A|3239
8OH6|1|1|U|3240
8OH6|1|1|G|3241
8OH6|1|1|U|3242
8OH6|1|1|C|3243
8OH6|1|1|A|3244
8OH6|1|1|A|3245
8OH6|1|1|C|3246
8OH6|1|1|A|3247

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain AG

60S ribosomal protein L33-A

Chain n

60S ribosomal protein L6

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13

Chain x

Ribosomal protein L22