Loop J3_8OH6

3D structure

PDB id: 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å

Loop

Sequence: UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA
Length: 36 nucleotides
Bulged bases: 8OH6|1|AS|A|3142, 8OH6|1|AS|G|3143, 8OH6|1|AS|A|3180, 8OH6|1|AS|G|3181, 8OH6|1|AS|G|3184, 8OH6|1|AS|A|3233, 8OH6|1|AS|A|3235, 8OH6|1|AS|C|3237
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OH6|1|AS|U|3138
8OH6|1|AS|U|3139
8OH6|1|AS|U|3140
8OH6|1|AS|U|3141
8OH6|1|AS|A|3142
8OH6|1|AS|G|3143
8OH6|1|AS|A|3144
8OH6|1|AS|U|3145
8OH6|1|AS|G|3146
*
8OH6|1|AS|C|3177
8OH6|1|AS|A|3178
8OH6|1|AS|U|3179
8OH6|1|AS|A|3180
8OH6|1|AS|G|3181
8OH6|1|AS|C|3182
8OH6|1|AS|A|3183
8OH6|1|AS|G|3184
8OH6|1|AS|G|3185
*
8OH6|1|AS|C|3230
8OH6|1|AS|G|3231
8OH6|1|AS|G|3232
8OH6|1|AS|A|3233
8OH6|1|AS|U|3234
8OH6|1|AS|A|3235
8OH6|1|AS|G|3236
8OH6|1|AS|C|3237
8OH6|1|AS|A|3238
8OH6|1|AS|A|3239
8OH6|1|AS|U|3240
8OH6|1|AS|G|3241
8OH6|1|AS|U|3242
8OH6|1|AS|C|3243
8OH6|1|AS|A|3244
8OH6|1|AS|A|3245
8OH6|1|AS|C|3246
8OH6|1|AS|A|3247

Current chains

Chain AS: 25S (gene name XR_002086444.1)

Nearby chains

Chain BA: 60S ribosomal protein L6
Chain BH: 60S ribosomal protein L14-B
Chain BJ: Ribosomal protein L13
Chain BK: Ribosomal protein L22
Chain CA: 60S ribosomal protein L33-A

J3_8OH6_050