J3_8OH6_072

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UAGAUAAAAAAUCAAUGC*GCUCUUUG*CAUA

Length

30 nucleotides

Bulged bases

8OH6|1|CM|A|215, 8OH6|1|CM|A|216, 8OH6|1|CM|U|238, 8OH6|1|CM|U|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OH6|1|CM|U|210
8OH6|1|CM|A|211
8OH6|1|CM|G|212
8OH6|1|CM|A|213
8OH6|1|CM|U|214
8OH6|1|CM|A|215
8OH6|1|CM|A|216
8OH6|1|CM|A|217
8OH6|1|CM|A|218
8OH6|1|CM|A|219
8OH6|1|CM|A|220
8OH6|1|CM|U|221
8OH6|1|CM|C|222
8OH6|1|CM|A|223
8OH6|1|CM|A|224
8OH6|1|CM|U|225
8OH6|1|CM|G|226
8OH6|1|CM|C|227
*
8OH6|1|CM|G|234
8OH6|1|CM|C|235
8OH6|1|CM|U|236
8OH6|1|CM|C|237
8OH6|1|CM|U|238
8OH6|1|CM|U|239
8OH6|1|CM|U|240
8OH6|1|CM|G|241
*
8OH6|1|CM|C|248
8OH6|1|CM|A|249
8OH6|1|CM|U|250
8OH6|1|CM|A|251

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CT

40S ribosomal protein S6

Chain CV

40S ribosomal protein S8

Chain CY

40S ribosomal protein S11A