J3_8OH6_079
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8OH6|1|CM|G|1184, 8OH6|1|CM|G|1186, 8OH6|1|CM|A|1188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_079 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0481
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OH6|1|CM|C|1165
8OH6|1|CM|U|1166
8OH6|1|CM|U|1167
8OH6|1|CM|A|1168
8OH6|1|CM|A|1169
8OH6|1|CM|U|1170
8OH6|1|CM|U|1171
8OH6|1|CM|U|1172
*
8OH6|1|CM|G|1183
8OH6|1|CM|G|1184
8OH6|1|CM|G|1185
8OH6|1|CM|G|1186
8OH6|1|CM|A|1187
8OH6|1|CM|A|1188
8OH6|1|CM|A|1189
8OH6|1|CM|C|1190
8OH6|1|CM|U|1191
8OH6|1|CM|C|1192
8OH6|1|CM|A|1193
8OH6|1|CM|C|1194
*
8OH6|1|CM|G|1440
8OH6|1|CM|G|1441
8OH6|1|CM|C|1442
8OH6|1|CM|C|1443
8OH6|1|CM|G|1444
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
- Chain DC
- 40S ribosomal protein S15
- Chain DF
- 40S ribosomal protein S18-B
- Chain DH
- Ribosomal protein S10
- Chain DQ
- 40S ribosomal protein S29A
- Chain DS
- Ubiquitin-40S ribosomal protein S31 fusion protein
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