J3_8OHD_017
3D structure
- PDB id
- 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG
- Length
- 31 nucleotides
- Bulged bases
- 8OHD|1|5|C|962, 8OHD|1|5|G|965, 8OHD|1|5|C|967, 8OHD|1|5|C|968, 8OHD|1|5|C|969, 8OHD|1|5|U|971, 8OHD|1|5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OHD|1|5|C|712
8OHD|1|5|C|713
*
8OHD|1|5|G|955
8OHD|1|5|A|956
8OHD|1|5|G|957
8OHD|1|5|G|958
8OHD|1|5|G|959
8OHD|1|5|A|960
8OHD|1|5|G|961
8OHD|1|5|C|962
8OHD|1|5|G|963
8OHD|1|5|A|964
8OHD|1|5|G|965
8OHD|1|5|A|966
8OHD|1|5|C|967
8OHD|1|5|C|968
8OHD|1|5|C|969
8OHD|1|5|G|970
8OHD|1|5|U|971
8OHD|1|5|C|972
8OHD|1|5|G|973
8OHD|1|5|C|974
8OHD|1|5|C|975
8OHD|1|5|G|976
*
8OHD|1|5|C|1278
8OHD|1|5|A|1279
8OHD|1|5|C|1280
8OHD|1|5|G|1281
8OHD|1|5|G|1282
8OHD|1|5|G|1283
8OHD|1|5|G|1284
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein L7
- Chain Le
- 60S ribosomal protein L32
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