J3_8OIP_002

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAAUU*AUAAAAAU*AGUU

Length

17 nucleotides

Bulged bases

8OIP|1|AA|A|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AA|A|40
8OIP|1|AA|A|41
8OIP|1|AA|A|42
8OIP|1|AA|U|43
8OIP|1|AA|U|44
*
8OIP|1|AA|A|179
8OIP|1|AA|U|180
8OIP|1|AA|A|181
8OIP|1|AA|A|182
8OIP|1|AA|A|183
8OIP|1|AA|A|184
8OIP|1|AA|A|185
8OIP|1|AA|U|186
*
8OIP|1|AA|A|212
8OIP|1|AA|G|213
8OIP|1|AA|U|214
8OIP|1|AA|U|215

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

Mitochondrial ribosomal protein S12

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

Mitochondrial ribosomal protein S25