J3_8OIP_004

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAUAAUC*GAUAGACCUUAC*GAAAG

Length

25 nucleotides

Bulged bases

8OIP|1|AA|U|580, 8OIP|1|AA|A|581, 8OIP|1|AA|A|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AA|C|560
8OIP|1|AA|U|561
8OIP|1|AA|A|562
8OIP|1|AA|U|563
8OIP|1|AA|A|564
8OIP|1|AA|A|565
8OIP|1|AA|U|566
8OIP|1|AA|C|567
*
8OIP|1|AA|G|578
8OIP|1|AA|A|579
8OIP|1|AA|U|580
8OIP|1|AA|A|581
8OIP|1|AA|G|582
8OIP|1|AA|A|583
8OIP|1|AA|C|584
8OIP|1|AA|C|585
8OIP|1|AA|U|586
8OIP|1|AA|U|587
8OIP|1|AA|A|588
8OIP|1|AA|C|589
*
8OIP|1|AA|G|706
8OIP|1|AA|A|707
8OIP|1|AA|A|708
8OIP|1|AA|A|709
8OIP|1|AA|G|710

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AH

Mitochondrial ribosomal protein S10

Chain AK

Mitochondrial ribosomal protein S14

Chain Aa

Peptide chain release factor 1, mitochondrial