J3_8OIP_005
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUG*CAG*CUUAUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OIP_005 not in the Motif Atlas
- Homologous match to J3_5J7L_007
- Geometric discrepancy: 0.1384
- The information below is about J3_5J7L_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OIP|1|AA|C|595
8OIP|1|AA|U|596
8OIP|1|AA|U|597
8OIP|1|AA|G|598
*
8OIP|1|AA|C|605
8OIP|1|AA|A|606
8OIP|1|AA|G|607
*
8OIP|1|AA|C|695
8OIP|1|AA|U|696
8OIP|1|AA|U|697
8OIP|1|AA|A|698
8OIP|1|AA|U|699
8OIP|1|AA|G|700
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AK
- Mitochondrial ribosomal protein S14
- Chain AZ
- Mitochondrial ribosomal protein S33
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
Coloring options: