J3_8OIP_010

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*AAUAACCCA*UGA

Length

14 nucleotides

Bulged bases

8OIP|1|AA|C|372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AA|U|326
8OIP|1|AA|U|327
*
8OIP|1|AA|A|367
8OIP|1|AA|A|368
8OIP|1|AA|U|369
8OIP|1|AA|A|370
8OIP|1|AA|A|371
8OIP|1|AA|C|372
8OIP|1|AA|C|373
8OIP|1|AA|C|374
8OIP|1|AA|A|375
*
8OIP|1|AA|U|382
8OIP|1|AA|G|383
8OIP|1|AA|A|384

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

bS6m,Mitochondrial ribosomal protein S6

Chain AP

Mitochondrial ribosomal protein S18C

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain containing 1

Chain Ai

Mitochondrial ribosomal protein S11