J3_8OIP_012

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGGAG*CUAC*GGAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AA|G|548
8OIP|1|AA|A|549
8OIP|1|AA|G|550
8OIP|1|AA|G|551
8OIP|1|AA|A|552
8OIP|1|AA|G|553
*
8OIP|1|AA|C|718
8OIP|1|AA|U|719
8OIP|1|AA|A|720
8OIP|1|AA|C|721
*
8OIP|1|AA|G|781
8OIP|1|AA|G|782
8OIP|1|AA|A|783
8OIP|1|AA|U|784
8OIP|1|AA|U|785

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

Mitochondrial ribosomal protein S7

Chain AG

P-site Met-tRNA(fMet)

Chain Ag

uS9m