J3_8OIQ_002

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIQ_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.2044

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8OIQ|1|B8|C|266
8OIQ|1|B8|A|267
8OIQ|1|B8|G|268
*
8OIQ|1|B8|C|279
8OIQ|1|B8|C|280
8OIQ|1|B8|A|281
8OIQ|1|B8|A|282
8OIQ|1|B8|C|283
*
8OIQ|1|B8|G|307
8OIQ|1|B8|A|308
8OIQ|1|B8|A|309
8OIQ|1|B8|G|310

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

Mitochondrial ribosomal protein L2

Chain Bm

Mitochondrial ribosomal protein L37