J3_8OIT_001

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAG*CAAUAGAUAUAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

8OIT|1|B8|U|104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIT|1|B8|C|8
8OIT|1|B8|U|9
8OIT|1|B8|A|10
8OIT|1|B8|G|11
*
8OIT|1|B8|C|101
8OIT|1|B8|A|102
8OIT|1|B8|A|103
8OIT|1|B8|U|104
8OIT|1|B8|A|105
8OIT|1|B8|G|106
8OIT|1|B8|A|107
8OIT|1|B8|U|108
8OIT|1|B8|A|109
8OIT|1|B8|U|110
8OIT|1|B8|A|111
8OIT|1|B8|G|112
8OIT|1|B8|U|113
8OIT|1|B8|A|114
8OIT|1|B8|C|115
*
8OIT|1|B8|G|122
8OIT|1|B8|G|123
8OIT|1|B8|A|124
8OIT|1|B8|A|125
8OIT|1|B8|A|126
8OIT|1|B8|G|127

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BB

39S ribosomal protein L23, mitochondrial

Chain BC

39S ribosomal protein L24, mitochondrial

Chain BF

39S ribosomal protein L47, mitochondrial

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain BN

39S ribosomal protein L4, mitochondrial

Chain BY

39S ribosomal protein L20, mitochondrial

Chain Bq

39S ribosomal protein L41, mitochondrial

Chain Bt

39S ribosomal protein L44, mitochondrial

Chain Bu

39S ribosomal protein L45, mitochondrial

Chain Bz

39S ribosomal protein L51, mitochondrial