J3_8OIT_003

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIT_003 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1278

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8OIT|1|B8|C|260
8OIT|1|B8|A|261
8OIT|1|B8|G|262
*
8OIT|1|B8|C|272
8OIT|1|B8|A|273
8OIT|1|B8|C|274
8OIT|1|B8|A|275
8OIT|1|B8|C|276
*
8OIT|1|B8|G|300
8OIT|1|B8|A|301
8OIT|1|B8|A|302
8OIT|1|B8|G|303

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

39S ribosomal protein L2, mitochondrial

Chain Bm

39S ribosomal protein L37, mitochondrial