J3_8OJ0_001

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8OJ0|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ0|1|5|C|112
8OJ0|1|5|A|113
8OJ0|1|5|G|114
8OJ0|1|5|C|115
8OJ0|1|5|G|116
*
8OJ0|1|5|C|155
8OJ0|1|5|G|156
8OJ0|1|5|U|157
8OJ0|1|5|A|158
8OJ0|1|5|C|159
8OJ0|1|5|G|160
*
8OJ0|1|5|C|275
8OJ0|1|5|C|276
8OJ0|1|5|G|277
8OJ0|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36