J3_8OJ0_012

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8OJ0|1|5|A|218, 8OJ0|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ0|1|5|C|196
8OJ0|1|5|A|197
8OJ0|1|5|A|198
8OJ0|1|5|G|199
*
8OJ0|1|5|C|215
8OJ0|1|5|C|216
8OJ0|1|5|C|217
8OJ0|1|5|A|218
8OJ0|1|5|G|219
8OJ0|1|5|C|220
8OJ0|1|5|C|221
8OJ0|1|5|C|222
8OJ0|1|5|G|223
8OJ0|1|5|U|224
8OJ0|1|5|G|225
8OJ0|1|5|G|226
8OJ0|1|5|A|227
8OJ0|1|5|C|228
*
8OJ0|1|5|G|240
8OJ0|1|5|G|241
8OJ0|1|5|U|242
8OJ0|1|5|A|243
8OJ0|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26