J3_8OJ8_008
3D structure
- PDB id
- 8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8OJ8|1|5|C|4116, 8OJ8|1|5|U|4117, 8OJ8|1|5|U|4118, 8OJ8|1|5|C|4119, 8OJ8|1|5|U|4120, 8OJ8|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OJ8_008 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2704
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OJ8|1|5|G|4091
8OJ8|1|5|G|4092
8OJ8|1|5|G|4093
8OJ8|1|5|G|4094
*
8OJ8|1|5|C|4114
8OJ8|1|5|G|4115
8OJ8|1|5|C|4116
8OJ8|1|5|U|4117
8OJ8|1|5|U|4118
8OJ8|1|5|C|4119
8OJ8|1|5|U|4120
8OJ8|1|5|G|4121
8OJ8|1|5|G|4122
8OJ8|1|5|C|4123
8OJ8|1|5|G|4124
8OJ8|1|5|C|4125
8OJ8|1|5|C|4126
8OJ8|1|5|A|4127
8OJ8|1|5|A|4128
8OJ8|1|5|G|4129
*
8OJ8|1|5|C|4155
8OJ8|1|5|G|4156
8OJ8|1|5|A|4157
8OJ8|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
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