J3_8OO0_008
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCU*AACUUCUGGAGUUAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8OO0|1|1|C|2510, 8OO0|1|1|U|2511, 8OO0|1|1|U|2512, 8OO0|1|1|C|2513, 8OO0|1|1|U|2514, 8OO0|1|1|G|2515, 8OO0|1|1|U|2519, 8OO0|1|1|U|2520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_008 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2844
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OO0|1|1|G|2492
8OO0|1|1|G|2493
8OO0|1|1|C|2494
8OO0|1|1|U|2495
*
8OO0|1|1|A|2508
8OO0|1|1|A|2509
8OO0|1|1|C|2510
8OO0|1|1|U|2511
8OO0|1|1|U|2512
8OO0|1|1|C|2513
8OO0|1|1|U|2514
8OO0|1|1|G|2515
8OO0|1|1|G|2516
8OO0|1|1|A|2517
8OO0|1|1|G|2518
8OO0|1|1|U|2519
8OO0|1|1|U|2520
8OO0|1|1|A|2521
8OO0|1|1|A|2522
8OO0|1|1|G|2523
*
8OO0|1|1|C|2537
8OO0|1|1|G|2538
8OO0|1|1|A|2539
8OO0|1|1|C|2540
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein l30-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
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