J3_8OO0_016
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8OO0|1|2|G|1196, 8OO0|1|2|G|1198, 8OO0|1|2|A|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_016 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1311
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OO0|1|2|C|1177
8OO0|1|2|U|1178
8OO0|1|2|U|1179
8OO0|1|2|A|1180
8OO0|1|2|A|1181
8OO0|1|2|U|1182
8OO0|1|2|U|1183
8OO0|1|2|U|1184
*
8OO0|1|2|G|1195
8OO0|1|2|G|1196
8OO0|1|2|G|1197
8OO0|1|2|G|1198
8OO0|1|2|A|1199
8OO0|1|2|A|1200
8OO0|1|2|A|1201
8OO0|1|2|C|1202
8OO0|1|2|U|1203
8OO0|1|2|C|1204
8OO0|1|2|A|1205
8OO0|1|2|C|1206
*
8OO0|1|2|G|1450
8OO0|1|2|G|1451
8OO0|1|2|C|1452
8OO0|1|2|C|1453
8OO0|1|2|G|1454
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein s15-like protein
- Chain SS
- Putative ribosomal protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- 40S ribosomal protein S27a-like protein
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