J3_8OO0_025

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAAAAGCAC*GGGUUAAAUAGCACGUGAAAU*ACGGAUCU

Length

40 nucleotides

Bulged bases

8OO0|1|1|U|391, 8OO0|1|1|A|395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|1|A|362
8OO0|1|1|U|363
8OO0|1|1|G|364
8OO0|1|1|A|365
8OO0|1|1|A|366
8OO0|1|1|A|367
8OO0|1|1|A|368
8OO0|1|1|G|369
8OO0|1|1|C|370
8OO0|1|1|A|371
8OO0|1|1|C|372
*
8OO0|1|1|G|383
8OO0|1|1|G|384
8OO0|1|1|G|385
8OO0|1|1|U|386
8OO0|1|1|U|387
8OO0|1|1|A|388
8OO0|1|1|A|389
8OO0|1|1|A|390
8OO0|1|1|U|391
8OO0|1|1|A|392
8OO0|1|1|G|393
8OO0|1|1|C|394
8OO0|1|1|A|395
8OO0|1|1|C|396
8OO0|1|1|G|397
8OO0|1|1|U|398
8OO0|1|1|G|399
8OO0|1|1|A|400
8OO0|1|1|A|401
8OO0|1|1|A|402
8OO0|1|1|U|403
*
8OO0|1|4|A|13
8OO0|1|4|C|14
8OO0|1|4|G|15
8OO0|1|4|G|16
8OO0|1|4|A|17
8OO0|1|4|U|18
8OO0|1|4|C|19
8OO0|1|4|U|20

Current chains

Chain 1

28S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain LY

60S ribosomal protein L26-like protein

Chain Le

60S ribosomal protein L32-like protein

Chain Ll

60S ribosomal protein L39