J3_8OO0_030

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGAUC*GGAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|1|G|1508
8OO0|1|1|U|1509
8OO0|1|1|C|1510
8OO0|1|1|G|1511
8OO0|1|1|A|1512
8OO0|1|1|U|1513
8OO0|1|1|C|1514
*
8OO0|1|1|G|1571
8OO0|1|1|G|1572
8OO0|1|1|A|1573
8OO0|1|1|A|1574
8OO0|1|1|G|1575
*
8OO0|1|1|C|1592
8OO0|1|1|A|1593
8OO0|1|1|C|1594

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L25-like protein

Chain Lg

Ribosomal protein l34-like protein

Chain Lk

60S ribosomal protein L38

Chain Ll

60S ribosomal protein L39