J3_8OO0_035

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAUC*GUUG*CACUAAUAG

Length

18 nucleotides

Bulged bases

8OO0|1|1|A|2846, 8OO0|1|1|U|2847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|1|C|2844
8OO0|1|1|U|2845
8OO0|1|1|A|2846
8OO0|1|1|U|2847
8OO0|1|1|C|2848
*
8OO0|1|1|G|2873
8OO0|1|1|U|2874
8OO0|1|1|U|2875
8OO0|1|1|G|2876
*
8OO0|1|1|C|2888
8OO0|1|1|A|2889
8OO0|1|1|C|2890
8OO0|1|1|U|2891
8OO0|1|1|A|2892
8OO0|1|1|A|2893
8OO0|1|1|U|2894
8OO0|1|1|A|2895
8OO0|1|1|G|2896

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LV

60S ribosomal protein l23-like protein