J3_8OO0_036
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGACG*CCUAGCAGG*CGUAUUGCAAUUUAGA
- Length
- 31 nucleotides
- Bulged bases
- 8OO0|1|1|A|3126, 8OO0|1|1|G|3127, 8OO0|1|1|A|3160, 8OO0|1|1|G|3161, 8OO0|1|1|G|3164, 8OO0|1|1|A|3209, 8OO0|1|1|U|3211, 8OO0|1|1|C|3213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OO0|1|1|U|3125
8OO0|1|1|A|3126
8OO0|1|1|G|3127
8OO0|1|1|A|3128
8OO0|1|1|C|3129
8OO0|1|1|G|3130
*
8OO0|1|1|C|3157
8OO0|1|1|C|3158
8OO0|1|1|U|3159
8OO0|1|1|A|3160
8OO0|1|1|G|3161
8OO0|1|1|C|3162
8OO0|1|1|A|3163
8OO0|1|1|G|3164
8OO0|1|1|G|3165
*
8OO0|1|1|C|3206
8OO0|1|1|G|3207
8OO0|1|1|U|3208
8OO0|1|1|A|3209
8OO0|1|1|U|3210
8OO0|1|1|U|3211
8OO0|1|1|G|3212
8OO0|1|1|C|3213
8OO0|1|1|A|3214
8OO0|1|1|A|3215
8OO0|1|1|U|3216
8OO0|1|1|U|3217
8OO0|1|1|U|3218
8OO0|1|1|A|3219
8OO0|1|1|G|3220
8OO0|1|1|A|3221
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
Coloring options: