J3_8OO0_040

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAA*UUAAUA*UA

Length

12 nucleotides

Bulged bases

8OO0|1|2|U|862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|2|U|630
8OO0|1|2|G|631
8OO0|1|2|A|632
8OO0|1|2|A|633
*
8OO0|1|2|U|858
8OO0|1|2|U|859
8OO0|1|2|A|860
8OO0|1|2|A|861
8OO0|1|2|U|862
8OO0|1|2|A|863
*
8OO0|1|2|U|963
8OO0|1|2|A|964

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11-like protein

Chain SN

40S ribosomal protein S13-like protein

Chain SW

40S ribosomal protein S22-like protein

Chain SX

40S ribosomal protein s23-like protein

Chain Sb

Ribosomal protein s27-like protein