J3_8OO0_050

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUUAAAAACCAAUG*CUUUCUG*CAU

Length

26 nucleotides

Bulged bases

8OO0|1|2|U|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|2|A|208
8OO0|1|2|G|209
8OO0|1|2|A|210
8OO0|1|2|U|211
8OO0|1|2|U|212
8OO0|1|2|A|213
8OO0|1|2|A|214
8OO0|1|2|A|215
8OO0|1|2|A|216
8OO0|1|2|A|217
8OO0|1|2|C|218
8OO0|1|2|C|219
8OO0|1|2|A|220
8OO0|1|2|A|221
8OO0|1|2|U|222
8OO0|1|2|G|223
*
8OO0|1|2|C|234
8OO0|1|2|U|235
8OO0|1|2|U|236
8OO0|1|2|U|237
8OO0|1|2|C|238
8OO0|1|2|U|239
8OO0|1|2|G|240
*
8OO0|1|2|C|247
8OO0|1|2|A|248
8OO0|1|2|U|249

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11-like protein