J3_8OO0_051
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8OO0|1|2|U|862
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_051 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.123
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8OO0|1|2|U|630
8OO0|1|2|G|631
8OO0|1|2|A|632
*
8OO0|1|2|U|859
8OO0|1|2|A|860
8OO0|1|2|A|861
8OO0|1|2|U|862
8OO0|1|2|A|863
*
8OO0|1|2|U|963
8OO0|1|2|A|964
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SN
- 40S ribosomal protein S13-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
- Chain Sb
- Ribosomal protein s27-like protein
Coloring options: