J3_8P03_013

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

8P03|1|2|U|224, 8P03|1|2|C|225, 8P03|1|2|C|275, 8P03|1|2|U|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P03|1|2|C|220
8P03|1|2|A|221
8P03|1|2|G|222
8P03|1|2|A|223
8P03|1|2|U|224
8P03|1|2|C|225
8P03|1|2|A|226
8P03|1|2|A|227
8P03|1|2|A|228
8P03|1|2|A|229
8P03|1|2|C|230
8P03|1|2|C|231
8P03|1|2|A|232
8P03|1|2|A|233
8P03|1|2|C|234
8P03|1|2|C|235
*
8P03|1|2|G|274
8P03|1|2|C|275
8P03|1|2|U|276
8P03|1|2|U|277
8P03|1|2|U|278
8P03|1|2|G|279
*
8P03|1|2|C|286
8P03|1|2|U|287
8P03|1|2|A|288
8P03|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11