3D structure

PDB id
8P03 (explore in PDB, NAKB, or RNA 3D Hub)
Description
48S late-stage initiation complex with m6A mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGGA*UUAAGAG*CAUUA
Length
16 nucleotides
Bulged bases
8P03|1|2|G|917
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8P03|1|2|U|672
8P03|1|2|G|673
8P03|1|2|G|674
8P03|1|2|A|675
*
8P03|1|2|U|913
8P03|1|2|U|914
8P03|1|2|A|915
8P03|1|2|A|916
8P03|1|2|G|917
8P03|1|2|A|918
8P03|1|2|G|919
*
8P03|1|2|C|1015
8P03|1|2|A|1016
8P03|1|2|U|1017
8P03|1|2|U|1018
8P03|1|2|A|1019

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain J
ribosomal protein eS7
Chain N
40S ribosomal protein S11
Chain P
ribosomal protein uS15
Chain Y
Ribosomal protein S15a
Chain Z
40S ribosomal protein S23
Chain c
40S ribosomal protein S27

Coloring options:

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