J3_8P09_002

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

8P09|1|2|G|987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P09_002 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1096

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

8P09|1|2|A|934
8P09|1|2|U|935
8P09|1|2|U|936
8P09|1|2|C|937
*
8P09|1|2|G|981
8P09|1|2|G|982
8P09|1|2|A|983
8P09|1|2|C|984
8P09|1|2|C|985
8P09|1|2|A|986
8P09|1|2|G|987
8P09|1|2|A|988
8P09|1|2|G|989
*
8P09|1|2|C|996
8P09|1|2|A|997
8P09|1|2|U|998
8P09|1|2|U|999
8P09|1|2|U|1000

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

ribosomal protein eS1

Chain Q

40S ribosomal protein uS11

Chain b

40S ribosomal protein S26